- Handle conflicting symlinks for icons, konsole, and fish directories
- Backup existing directories before home-manager creates new ones
- Run conflict handling before linkGeneration phase
- Moved all inline shell scripts to packages/scripts/
- Created packages/default.nix for clean package definitions
- Reduced flake.nix from 400+ lines to ~80 lines
- Maintained all functionality while improving maintainability
- All builds and checks still pass