refactor: standardize config structure and consolidate modules

- Standardized apps/ directory by renaming all entry points (e.g., home.nix) to default.nix and updating imports to use directory paths.
- Consolidated system/ logic into modules/system/, eliminating the top-level system/ directory and redundant wrappers.
- Merged subsidiary utility scripts (e.g., hakase-popup.nix, switch-wallpaper.nix) into their parent default.nix files for better cohesion.
- Cleaned up unused files and updated all module references to reflect the new structure.

modules/system/nix.nix

@@ -0,0 +1,15 @@
+{pkgs, ...}: {
+  nix.settings = {
+    substituters = [
+      "https://cache.nixos.org"
+      "https://hyprland.cachix.org"
+      "https://nix-community.cachix.org"
+    ];
+    trusted-public-keys = [
+      "cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY="
+      "hyprland.cachix.org-1:a7pgxzMz7+chwVL3/pzj6jIBMioiJM7ypFP8PwtkuGc="
+      "nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs="
+    ];
+    experimental-features = ["nix-command" "flakes"];
+  };
+}